IODP Proceedings    Volume contents     Search

Expedition-related bibliography*

IODP publications

Scientific Prospectus

D’Hondt, S., Inagaki, F., and Alvarez Zarikian, C., 2010. South Pacific Gyre Microbiology. IODP Sci. Prosp., 329. doi:10.2204/​iodp.sp.329.2010

Preliminary Report

Expedition 329 Scientists, 2011. South Pacific Gyre subseafloor life. IODP Prel. Rept., 329. doi:10.2204/​iodp.pr.329.2011

Scientific Drilling journal

D’Hondt, S., Inagaki, F., Alvarez Zarikian, C.A., and the IODP Expedition 329 Science Party, 2013. IODP Expedition 329: life and habitability beneath the seafloor of the South Pacific Gyre. Sci. Drill., 15:4–10. doi:10.2204/​iodp.sd.15.01.2013

Dunlea, A.G., Murray, R.W., Harris, R.N., Vasiliev, M.A., Evans, H., Spivack, A.J., and D’Hondt, S., 2013. Assessment and use of NGR instrumentation on the JOIDES Resolution to quantify U, Th, and K concentrations in marine sediment. Sci. Drill., 15:57–63. doi:10.2204/​iodp.sd.15.05.2013

Proceedings volume

D’Hondt, S., Inagaki, F., Alvarez Zarikian, C.A., and the Expedition 329 Scientists, 2011. Proc. IODP, 329: Tokyo (Integrated Ocean Drilling Program Management International, Inc.). doi:10.2204/​iodp.proc.329.2011

Expedition reports

Expedition 329 Scientists, 2011. Expedition 329 summary. In D’Hondt, S., Inagaki, F., Alvarez Zarikian, C.A., and the Expedition 329 Scientists, Proc. IODP, 329: Tokyo (Integrated Ocean Drilling Program Management International, Inc.). doi:10.2204/​iodp.proc.329.101.2011

Expedition 329 Scientists, 2011. Methods. In D’Hondt, S., Inagaki, F., Alvarez Zarikian, C.A., and the Expedition 329 Scientists, Proc. IODP, 329: Tokyo (Integrated Ocean Drilling Program Management International, Inc.). doi:10.2204/​iodp.proc.329.102.2011

Expedition 329 Scientists, 2011. Site U1365. In D’Hondt, S., Inagaki, F., Alvarez Zarikian, C.A., and the Expedition 329 Scientists, Proc. IODP, 329: Tokyo (Integrated Ocean Drilling Program Management International, Inc.). doi:10.2204/​iodp.proc.329.103.2011

Expedition 329 Scientists, 2011. Site U1366. In D’Hondt, S., Inagaki, F., Alvarez Zarikian, C.A., and the Expedition 329 Scientists, Proc. IODP, 329: Tokyo (Integrated Ocean Drilling Program Management International, Inc.). doi:10.2204/​iodp.proc.329.104.2011

Expedition 329 Scientists, 2011. Site U1367. In D’Hondt, S., Inagaki, F., Alvarez Zarikian, C.A., and the Expedition 329 Scientists, Proc. IODP, 329: Tokyo (Integrated Ocean Drilling Program Management International, Inc.). doi:10.2204/​iodp.proc.329.105.2011

Expedition 329 Scientists, 2011. Site U1368. In D’Hondt, S., Inagaki, F., Alvarez Zarikian, C.A., and the Expedition 329 Scientists, Proc. IODP, 329: Tokyo (Integrated Ocean Drilling Program Management International, Inc.). doi:10.2204/​iodp.proc.329.106.2011

Expedition 329 Scientists, 2011. Site U1369. In D’Hondt, S., Inagaki, F., Alvarez Zarikian, C.A., and the Expedition 329 Scientists, Proc. IODP, 329: Tokyo (Integrated Ocean Drilling Program Management International, Inc.). doi:10.2204/​iodp.proc.329.107.2011

Expedition 329 Scientists, 2011. Site U1370. In D’Hondt, S., Inagaki, F., Alvarez Zarikian, C.A., and the Expedition 329 Scientists, Proc. IODP, 329: Tokyo (Integrated Ocean Drilling Program Management International, Inc.). doi:10.2204/​iodp.proc.329.108.2011

Expedition 329 Scientists, 2011. Site U1371. In D’Hondt, S., Inagaki, F., Alvarez Zarikian, C.A., and the Expedition 329 Scientists, Proc. IODP, 329: Tokyo (Integrated Ocean Drilling Program Management International, Inc.). doi:10.2204/​iodp.proc.329.109.2011

Morono, Y., Kallmeyer, J., Inagaki, F., and the Expedition 329 Scientists, 2011. Preliminary experiment for cell count using flow cytometry. In D’Hondt, S., Inagaki, F., Alvarez Zarikian, C.A., and the Expedition 329 Scientists, Proc. IODP, 329: Tokyo (Integrated Ocean Drilling Program Management International, Inc.). doi:10.2204/​iodp.proc.329.110.2011

Hoppie, B., Bronk, T.R., and the Expedition 329 Scientists, 2011. Construction and first deployment of the JOIDES Resolution’s Secchi discs. In D’Hondt, S., Inagaki, F., Alvarez Zarikian, C.A., and the Expedition 329 Scientists, Proc. IODP, 329: Tokyo (Integrated Ocean Drilling Program Management International, Inc.). doi:10.2204/​iodp.proc.329.111.2011

D’Hondt, S., Abrams, L.J., Anderson, R., Dorrance, J., Durbin, A., Ellett, L., Ferdelman, T., Fischer, J., Forschner, S., Fuldauer, R., Goldstein, H., Graham, D., Griffith, W., Halm, H., Harris, R., Harrison, B., Hasiuk, F., Horn, G., Kallmeyer, J., Lever, M., Meyer, J., Morse, L., Moser, C., Murphy, B., Nordhausen, A., Parry, L., Pockalny, R., Puschell, A., Rogers, J., Schrum, H., Smith, D.C., Soffientino, B., Spivack, A.J., Stancin, A., Steinman, M., and Walczak, P., 2011. KNOX-02RR: drilling site survey—life in subseafloor sediments of the South Pacific Gyre. In D’Hondt, S., Inagaki, F., Alvarez Zarikian, C.A., and the Expedition 329 Scientists, Proc. IODP, 329: Tokyo (Integrated Ocean Drilling Program Management International, Inc.). doi:10.2204/​iodp.proc.329.112.2011

Expedition research results

Cortese, G., and Alvarez Zarikian, C.A., 2015. Data report: radiolarian occurrences at IODP Expedition 329, Site U1371. In D’Hondt, S., Inagaki, F., Alvarez Zarikian, C.A., and the Expedition 329 Scientists, Proceedings of the Integrated Ocean Drilling Program, 329: Tokyo (Integrated Ocean Drilling Program Management International, Inc.). http://dx.doi.org/​10.2204/​iodp.proc.329.202.2015

Dubois, N., Mitchell, N.C., and Hall, I.R., 2014. Data report: particle size distribution for IODP Expedition 329 sites in the South Pacific Gyre. In D’Hondt, S., Inagaki, F., Alvarez Zarikian, C.A., and the Expedition 329 Scientists, Proc. IODP, 329: Tokyo (Integrated Ocean Drilling Program Management International, Inc.). doi:10.2204/​iodp.proc.329.201.2014

Sauvage, J., Lewis, L., Graham, D., Spivack, A.J., and D’Hondt, S.D., 2017. Data report: quantification of potential drilling contamination using perfluorocarbon tracer at IODP Expedition 329 sites. In D’Hondt, S., Inagaki, F., Alvarez Zarikian, C.A., and the Expedition 329 Scientists, Proceedings of the Integrated Ocean Drilling Program, 329: Tokyo (Integrated Ocean Drilling Program Management International, Inc.). http://dx.doi.org/​10.2204/​iodp.proc.329.204.2017

Suto, I., and Uramoto, G.-I., 2015. Data report: diatom biostratigraphy of IODP Site U1371 in the South Pacific Ocean. In D’Hondt, S., Inagaki, F., Alvarez-Zarikian, C.A., and the Expedition 329 Scientists, Proceedings of the Integrated Ocean Drilling Program, 329: Tokyo (Integrated Ocean Drilling Program Management International, Inc.) http://dx.doi.org/​10.2204/​iodp.proc.329.203.2015

Syntheses

Pending.

Journals/Books

Alawi, M., Schneider, B., and Kallmeyer, J., 2014. A procedure for separate recovery of extra- and intracellular DNA from a single marine sediment sample. J. Microbiol. Methods, 104:36–42. doi:10.1016/​j.mimet.2014.06.009

Alvarez Zarikian, C.A., 2015. Cenozoic bathyal and abyssal ostracods beneath the South Pacific Gyre (IODP Expedition 329 Sites U1367, U1368 and U1370). Palaeogeogr., Palaeoclimatol., Palaeoecol., 419:115–142. doi:10.1016/​j.palaeo.2014.07.024

De Vleeschouwer, D., Dunlea, A.G., Auer, G., Anderson, C.H., Brumsack, H., de Loach, A., Gurnis, M., Huh, Y., Ishiwa, T., Jang, K., Kominz, M.A., März, C., Schnetger, B., Murray, R.W., Pälike, H., and Expedition 356 Shipboard Scientists, 2017. Quantifying K, U, and Th contents of marine sediments using shipboard natural gamma radiation spectra measured on DV Joides Resolution. Geochemistry, Geophysics, Geosystems, 18(3):1053–1064. https://doi.org/​10.1002/​2016GC006715

D’Hondt, S., Inagaki, F., Alvarez Zarikian, C., Abrams., L.J., Dubois, N., Engelhardt, T., Evans, H., Ferdelman, T., Gribsholt, B., Harris, R.N., Hoppie, B.W., Hyun, J.-H., Kallmeyer, J., Kim, J., Lynch, J.E., McKinley, C.C., Mitsunobu, S., Morono, Y., Murray, R.W., Pockalny, R., Sauvage, J., Shimono, T., Shiraishi, F., Smith, D.C., Smith-Duque, C.E., Spivack, A.J., Steinsbu, B.O., Suzuki, Y., Szpak, M., Toffin, L., Uramoto, G., Yamaguchi, Y.T., Zhang, G., Zhang, X.-H., and Ziebis, W., 2015. Presence of oxygen and aerobic communities from sea floor to basement in deep-sea sediments. Nature Geoscience, 8:299–304. http://​dx.doi.org/​10.1038/​ngeo2387

D’Hondt, S., Wang, G., and Spivack, A.J., 2014. The underground economy (energetic constraints of subseafloor life). In Stein, R., Blackman, D., Inagaki, F., and Larsen, H.-C., Developments in Marine Geology (Volume 7): Earth and Life Processes Discovered from Subseafloor Environments: A Decade of Science Achieved by the Integrated Ocean Drilling Program (IODP). R. Stein (Series Ed.): Amsterdam (Elsevier B.V.), 127–148. http://​dx.doi.org/​10.1016/​B978-0-444-62617-2.00005-0

Dunlea, A.G., Murray, R.W., Sauvage, J., Pockalny, R.A., Spivack, A.J., Harris, R.N., and D’Hondt, S., 2015. Cobalt-based age models of pelagic clay in the South Pacific Gyre. Geochemistry, Geophysics, Geosystems, 16(8):2694–2710. http://​dx.doi.org/​10.1002/​2015GC005892

Dunlea, A.G., Murray, R.W., Sauvage, J., Spivack, A.J., Harris, R.N., and D’Hondt, S., 2015. Dust, volcanic ash, and the evolution of the South Pacific Gyre through the Cenozoic. Paleoceanography, 30(8):1078–1099. http://​dx.doi.org/​10.1002/​2015PA002829

Durbin, A.M., and Teske, A., 2012. Archaea in organic-lean and organic-rich marine subsurface sediments: an environmental gradient reflected in distinct phylogenetic lineages. Front. Extreme Microbiol., 3:168. doi:10.3389/​fmicb.2012.00168

Engelhardt, T., Kallmeyer, J., Cypionka, H., and Engelen, B., 2014. High virus-to-cell ratios indicate ongoing production of viruses in deep subsurface sediments. ISME J., 8:1503–1509. doi:10.1038/​ismej.2013.245

Fan, X., Qiao, Y., Gao, X., and Zhang, X.-H., 2014. Nocardioides pacificus sp. nov., isolated from deep sub-seafloor sediment of South Pacific Gyre. Int. J. Syst. Evol. Microbiol., 64(7):2217–2222. doi:10.1099/​ijs.0.059873-0

Fan, X., Yu, T., Li, Z., and Zhang, X.-H., 2014. Luteimonas abyssi sp. nov., isolated from deep-sea sediment. Int. J. Syst. Evol. Microbiol., 64(2):668–674. doi:10.1099/​ijs.0.056010-0

Fan, X., Zhang, Z., Li, Z., and Zhang, X.-H., 2014. Luteococcus sediminum sp. nov., isolated from deep subseafloor sediment of the South Pacific Gyre. International Journal of Systematic and Evolutionary Microbiology, 64(8):2522–2527. doi:10.1099/​ijs.0.058529-0

Fisher, A.T., Alt, J., and Bach, W., 2014. Hydrologic properties, processes and alteration in the igneous ocean. In Stein, R., Blackman, D., Inagaki, F., and Larsen, H.-C., Developments in Marine Geology (Volume 7): Earth and Life Processes Discovered from Subseafloor Environments: A Decade of Science Achieved by the Integrated Ocean Drilling Program (IODP). R. Stein (Series Ed.): Amsterdam (Elsevier B.V.), 507–551. http://​dx.doi.org/​10.1016/​B978-0-444-62617-2.00018-9

Gao, X., Zhang, Z., Dai, X., and Zhang, X.-H., 2015. Hyunsoonleella pacifica sp. nov., isolated from seawater of South Pacific Gyre. International Journal of Systematic and Evolutionary Microbiology, 65:1155–1159. http://​dx.doi.org/​10.1099/​ijs.0.000071

Gao, X., Zhang, Z., Dai, X., and Zhang, X.-H., 2015. Spongiibacterium pacificum sp. nov., isolated from seawater of South Pacific Gyre and emended description of the genus Spongiibacterium. International Journal of Systematic and Evolutionary Microbiology, 65:154–158. http://dx.doi.org/​10.1099/​ijs.0.069906-0

Inagaki, F., and Orphan, V., 2014. Exploration of subseafloor life and the biosphere through IODP (2003–2013). In Stein, R., Blackman, D., Inagaki, F., and Larsen, H.-C., Developments in Marine Geology (Volume 7): Earth and Life Processes Discovered from Subseafloor Environments: A Decade of Science Achieved by the Integrated Ocean Drilling Program (IODP). R. Stein (Series Ed.): Amsterdam (Elsevier B.V.), 39–63. http://​dx.doi.org/​10.1016/​B978-0-444-62617-2.00002-5

Lado Insua, T., Spivack, A.J., Graham, D., D’Hondt, S., and Moran, K., 2014. Reconstruction of Pacific Ocean bottom water salinity during the Last Glacial Maximum. Geophys. Res. Lett., 41(8):2914–2920. doi:10.1002/​2014GL059575

Lever, M.A., 2012. Acetogenesis in the energy-starved deep biosphere—a paradox? Front. Extreme Microbiol., 2:284. doi:10.3389/​fmicb.2011.00284

Liu, Y., Zhang, Z., Wang, Y., Zheng, Y., and Zhang, X.-H., 2016. Enterovibrio pacificus sp. nov., isolated from seawater of the South Pacific Gyre and emended description of Enterovibrio coralii and the genus Enterovibrio. International Journal of Systematic and Evolutionary Microbiology, 66(1):319–325. http://dx.doi.org/​10.1099/​ijsem.0.000721

Monastersky, R., 2012. Ancient fungi found in deep-sea mud. Nature (London, U. K.), 492(7428):163. doi:10.1038/​492163a

Morono, Y., and Inagaki, F., 2016. Analysis of low-biomass microbial communities in the deep biosphere. In Sima, S., and Gadd, G.M. (Eds.), Advances in Applied Microbiology (Volume 95): Amsterdam (Elsevier), 149–178. https://doi.org/​10.1016/​bs.aambs.2016.04.001

Morono, Y., and Kallmeyer, J., 2014. Biomass, diversity, and metabolic functions of subseafloor life: detection and enumeration of microbial cells in subseafloor sediment. In Stein, R., Blackman, D., Inagaki, F., and Larsen, H.-C., Developments in Marine Geology (Volume 7): Earth and Life Processes Discovered from Subseafloor Environments: A Decade of Science Achieved by the Integrated Ocean Drilling Program (IODP). R. Stein (Series Ed.): Amsterdam (Elsevier B.V.), 65–83. http://​dx.doi.org/​10.1016/​B978-0-444-62617-2.00003-7

Morono, Y., Terada, T., Kallmeyer, J., and Inagaki, F., 2013. An improved cell separation technique for marine subsurface sediments: applications for high-throughput analysis using flow cytometry and cell sorting. Environ. Microbiol., 15(10):2841–2849. doi:10.1111/​1462-2920.12153

Orcutt, B.N., and Edwards, K.J., 2014. Life in the ocean crust: lessons from subseafloor laboratories. In Stein, R., Blackman, D., Inagaki, F., and Larsen, H.-C., Developments in Marine Geology (Volume 7): Earth and Life Processes Discovered from Subseafloor Environments: A Decade of Science Achieved by the Integrated Ocean Drilling Program (IODP). R. Stein (Series Ed.): Amsterdam (Elsevier B.V.), 175–196. http://​dx.doi.org/​10.1016/​B978-0-444-62617-2.00007-4

Parkes, R.J., Cragg, B., Roussel, E., Webster, G., Weightman, A., and Sass, H., 2014. A review of prokaryotic populations and processes in sub-seafloor sediments, including biosphere:geosphere interactions. Mar. Geol., 352:409–425. doi:10.1016/​j.margeo.2014.02.009

Sauvage, J., Spivack, A.J., Murray, R.W., and D’Hondt, S., 2014. Determination of in situ dissolved inorganic carbon concentration and alkalinity for marine sedimentary porewater. Chem. Geol., 387:66–73. doi:10.1016/​j.chemgeo.2014.06.010

Shiraishi, F., Mitsunobu, S., Suzuki, K., Hoshino, T., Morono, Y., and Inagaki, F., 2016. Dense microbial community on a ferromanganese nodule from the ultra-oligotrophic South Pacific gyre: implications for biogeochemical cycles. Earth and Planetary Science Letters, 447:10–20. http://dx.doi.org/​10.1016/​j.epsl.2016.04.021

Teske, A., Biddle, J.F., and Lever, M.A., 2014. Genetic evidece of subseafloor microbial communities. In Stein, R., Blackman, D., Inagaki, F., and Larsen, H.-C., Developments in Marine Geology (Volume 7): Earth and Life Processes Discovered from Subseafloor Environments: A Decade of Science Achieved by the Integrated Ocean Drilling Program (IODP). R. Stein (Series Ed.): Amsterdam (Elsevier B.V.), 85–125. http://​dx.doi.org/​10.1016/​B978-0-444-62617-2.00004-9

Uramoto, G.-I., Morono, Y., Uematsu, K., and Inagaki, F., 2014. An improved sample preparation method for imaging microstructures of fine-grained marine sediment using microfocus X-ray computed tomography and scanning electron microscopy. Limnol. Oceanogr. Methods, 12:469–483. doi:10.4319/​lom.2014.12.469

Wang, F., Lu, S., Orcutt, B.N., Xie, W., Chen, Y., Xiao, X., and Edwards, K.J., 2013. Discovering the roles of subsurface microorganisms: progress and future of deep biosphere investigation. Chinese Science Bulletin, 58(4):456–467. http://dx.doi.org/​10.1007/​s11434-012-5358-x

Wang, Y., Liu, Y., Zhang, Z., Zheng, Y., and Zhang, X.-H., 2016. Marinicella pacifica sp. nov., isolated from seawater. International Journal of Systematic and Evolutionary Microbiology, 66:2313–2318. http://dx.doi.org/​10.1099/​ijsem.0.001027

Wang, Y., Yu, M., Liu, Y., Yang, X., and Zhang, X.-H., 2016. Bacterioplanoides pacificum gen. nov., sp. nov., isolated from seawater of South Pacific Gyre. International Journal of Systematic and Evolutionary Microbiology, 66:5010–5015. http://dx.doi.org/​10.1099/​ijsem.0.001461

Wehrmann, L.M., and Ferdelman, T.G. 2014. Biogeochemical consequences of the sedimentary subseafloor biosphere. In Stein, R., Blackman, D., Inagaki, F., and Larsen, H.-C., Developments in Marine Geology (Volume 7): Earth and Life Processes Discovered from Subseafloor Environments: A Decade of Science Achieved by the Integrated Ocean Drilling Program (IODP). R. Stein (Series Ed.): Amsterdam (Elsevier B.V.), 217–252. http://​dx.doi.org/​10.1016/​B978-0-444-62617-2.00009-8

Yamazaki, T., and Shimono, T., 2013. Abundant bacterial magnetite occurrence in oxic red clay. Geology, 41(11):1191–1194. doi:10.1130/​G34782.1

Yang, K., Kim, J., Kogure, T., Dong, H., Baik, H., Hoppie, B., and Harris, R., 2016. Smectite, illite, and early diagenesis in South Pacific Gyre subseafloor sediment. Applied Clay Science, 134(1):34–43. https://doi.org/​10.1016/​j.clay.2016.03.041

Yin, Q., Fu, B., Li, B., Shi, X., Inagaki, F., and Zhang, X.-H., 2013. Spatial variations in microbial community composition in surface seawater from the ultra-oligotrophic center to rim of the South Pacific gyre. PLoS One, 8(2):E55148. doi:10.1371/​journal.pone.0055148

Yu, C., Yu, S., Zhang, Z., Li, Z., and Zhang, X.-H., 2014. Oceanobacillus pacificus sp. nov., isolated from a deep-sea sediment of the South Pacific Gyre. Int. J. Syst. Evol. Microbiol., 64(4):1278–1283. doi:10.1099/​ijs.0.056481-0

Yu, T., Yin, Q., Song, X., Zhao, R., Shi, X., and Zhang, X.-H., 2013. Aquimarina longa sp. nov., isolated from seawater, and emended description of Aquimarina muelleri. Int. J. Syst. Evol. Microbiol, 63(4):1235–1240. doi:10.1099/​ijs.0.041509-0

Yu, T., Zhang, Z., Fan, X., Shi, X., and Zhang, X.-H., 2013. Aquimarina megaterium sp. nov., isolated from seawater. Int. J. Syst. Evol. Microbiol., 64(1):122–127. doi:10.1099/​ijs.0.055517-0

Zhang, G., Smith-Duque, C., Tang, S., Li, H., Zarikian, C., D’Hondt, S., Inagaki, F., and IODP Expedition 329 Scientists, 2012. Geochemistry of basalts from IODP Site U1365: implications for magmatism and mantle source signatures of the mid-Cretaceous Osbourn Trough. Lithos, 144–145:73–87. doi:10.1016/​j.lithos.2012.04.014

Zhang, G.-L., Chen, L.-H., and Li, S.-Z., 2013. Mantle dynamics and generation of a geochemical mantle boundary along the East Pacific Rise—Pacific/Antarctic Ridge. Earth Planet. Sci. Lett., 383:153–163. doi:10.1016/​j.epsl.2013.09.045

Zhang, G.-L., and Li, C., 2016. Interactions of the Greater Ontong Java mantle plume component with the Osbourn Trough. Scientific Reports, 6:37561. http://dx.doi.org/​10.1038/​srep37561

Zhang, G.-L., and Smith-Duque, C., 2014. Seafloor basalt alteration and chemical change in the ultra thinly sedimented South Pacific. Geochem., Geophys., Geosyst., 15(7):3066–3080. doi:10.1002/​2013GC00514M

Zhang, L., Wang, Y., Liang, J., Song, Q., and Zhang, X.-H., 2016. Degradation properties of various macromolecules of cultivable psychrophilic bacteria from the deep-sea water of the South Pacific Gyre. Extremophiles, 20(5):663–671. http://dx.doi.org/​10.1007/​s00792-016-0856-4

Zhang, Z., Fan, X., Gao, X., and Zhang, X.-H., 2014. Achromobacter sediminum sp. nov., isolated from deep subseafloor sediment of South Pacific Gyre. Int. J. Syst. Evol. Microbiol., 64(7):2244–2249. doi:10.1099/​ijs.0.062265-0

Zhang, Z., Gao, X., Qiao, Y., Wang, Y., and Zhang, X.-H., 2015. Muricauda pacifica sp. nov., isolated from seawater of the South Pacific Gyre. International Journal of Systematic and Evolutionary Microbiology, 65(11):4087–4092. http://dx.doi.org/​10.1099/​ijsem.0.000542

Zhang, Z., Gao, X., Wang, L., and Zhang, X.H., 2015. Dokdonia pacifica sp. nov., isolated from seawater. International Journal of Systematic and Evolutionary Microbiology, 65(7):2222–2226. http://dx.doi.org/​10.1099/​ijs.0.000252

Zhang, Z., Gao, X., Wang, L., and Zhang, X.-H., 2015. Leucothrix pacifica sp. nov., isolated from seawater, and emended description of the genus Leucothrix. International Journal of Systematic and Evolutionary Microbiology, 65(8):2397–2402. http://dx.doi.org/​10.1099/​ijs.0.000270

Zhang, Z., Yu, C., Wang, X., Yu, S., and Zhang, X.-H., 2016. Arcobacter pacificus sp. nov., isolated from seawater of the South Pacific Gyre. International Journal of Systematic and Evolutionary Microbiology, 66:542–547. http://dx.doi.org/​10.1099/​ijsem.0.000751

Zhang, Z., Yu, T., Xu, T., and Zhang, X.-H., 2014. Aquimarina pacifica sp. nov., isolated from seawater. Int. J. Syst. Evol. Microbiol., 64(6):1991–1997. doi:10.1099/​ijs.0.062695-0

Zhu, L., 2014. Identification of secondary metabolite gene clusters of bacteria from South Pacific Gyre subseafloor sediment [M.S. thesis]. University of Rhode Island, Kingston. http://gradworks.umi.com/​1555704.pdf

Conferences

American Geophysical Union (AGU) Fall Meeting 2009

Kallmeyer, J., Pockalny, R.A., D’Hondt, S.L., and Adhikari, R.R., 2009. A new estimate of total microbial subseafloor biomass. Eos, Transactions of the American Geophysical Union, 90(52)(Suppl.):B23C-0381. (Abstract) http://abstractsearch.agu.org/​meetings/​2009/​FM/​B23C-0381.html

AGU Fall Meeting 2011

D’Hondt, S.L., Inagaki, F., Alvarez Zarikian, C.A., and the Integrated Ocean Drilling Program Expedition 329 Shipboard Scientific Party, 2011. A deep oxic ecosystem in the subseafloor South Pacific Gyre [presented at the 2011 American Geophysical Union Fall Meeting, San Francisco, CA, 5–9 December 2011]. (Abstract B44B-03) http://abstractsearch.agu.org/​meetings/​2011/​FM/​B44B-03.html

Ferdelman, T.G., Ziebis, W., Patel, A., Krupke, A., and the IODP Expedition 329 Shipboard Scientific Party, 2011. Autotrophic and heterotrophic microbial activity in sediments underlying the ultra-oligotrophic South Pacific Gyre [presented at the 2011 American Geophysical Union Fall Meeting, San Francisco, CA, 5–9 December 2011]. (Abstract B51K-0559) http://abstractsearch.agu.org/​meetings/​2011/​FM/​B51K-0559.html

Lado Insua, T., Spivack, A.J., D’Hondt, S.L., Graham, D., Moran, K., the Expedition Knorr 195 (III) Shipboard Scientific Party, and the Integrated Ocean Drilling Program Expedition 329 Shipboard Scientific Party, 2011. Reconstruction of Pacific bottom water salinity during the Last Glaciation Maximum [presented at the 2011 American Geophysical Union Fall Meeting, San Francisco, CA, 5–9 December 2011]. (Abstract PP11B-1791) http://abstractsearch.agu.org/​meetings/​2011/​FM/​PP11B-1791.html

Morono, Y., Kallmeyer, J., Terada, T., Inagaki, F., and the IODP Expedition 329 Shipboard Science Party, 2011. An improved method for high-throughput discrimination and enumeration of sedimentary cells using flow cytometry [presented at the 2011 American Geophysical Union Fall Meeting, San Francisco, CA, 5–9 December 2011]. (Abstract B44B-04) http://abstractsearch.agu.org/​meetings/​2011/​FM/​B44B-04.html

Reese, B.K., Shepard, A., St. Peter, C., and Mills, H.J., 2011. Biogeography of metabolically active microbial populations within the subseafloor biosphere [presented at the 2011 American Geophysical Union Fall Meeting, San Francisco, CA, 5–9 December 2011]. (Abstract B51K-0561) http://abstractsearch.agu.org/​meetings/​2011/​FM/​B51K-0561.html

Sauvage, J.F., Spivack, A.J., D’Hondt, S.L., and the Integrated Ocean Drilling Program Expedition 329 Shipboard Scientific Party, 2011. Use of pore-water composition to reconstruct past dissolved inorganic carbon concentration and alkalinity in Pacific bottom water [presented at the 2011 American Geophysical Union Fall Meeting, San Francisco, CA, 5–9 December 2011]. (Abstract PP31B-1858) http://abstractsearch.agu.org/​meetings/​2011/​FM/​PP31B-1858.html

Yang, K., Kim, J., Hoppie, B.W., and Harris, R.N., 2011. Characterization of clay minerals in deep subseafloor sediment, South Pacific Gyre: IODP Expedition 329 [presented at the 2010 American Geophysical Union Ocean Sciences Meeting, Portland, OR, 22–26 February 2010]. (Abstract OS11B-1480) http://abstractsearch.agu.org/​meetings/​2011/​FM/​OS11B-1480.html

AGU Fall Meeting 2012

Alvarez Zarikian, C.A., Wade, B.S., Flores Villarejo, J.A., and Firth, J.V., 2012. Oligocene to mid-Pliocene deep sea Ostracoda from the South Pacific gyre and their paleoceanographic significance [presented at the 2012 American Geophysical Union Fall Meeting, San Francisco, CA, 3–7 December 2012]. (Abstract PP31B-2029) http://abstractsearch.agu.org/​meetings/​2012/​FM/​PP31B-2029.html

Amaya, D., Thomas, D.J., Marcantonio, F., Korty, R., Huber, M., Winckler, G., and Alvarez Zarikian, C.A., 2012. Reconstruction of South Pacific dust accumulation during the early Paleogene greenhouse [presented at the 2012 American Geophysical Union Fall Meeting, San Francisco, CA, 3–7 December 2012]. (Abstract PP13A-2063) http://abstractsearch.agu.org/meetings/2012/FM/PP13A-2063.html

Berger, A.C., Thomas, D.J., and Alvarez Zarikian, C.A., 2012. The Paleogene record of South Pacific Deep Water—Nd isotopes from IODP Site U1370 [presented at the 2012 American Geophysical Union Fall Meeting, San Francisco, CA, 3–7 December 2012]. (Abstract PP31A-2006) http://abstractsearch.agu.org/meetings/2012/FM/PP31A-2006.html

Dubois, N., Mitchell, N.C., and Hall, I.R., 2012. Sedimentation in an oceanic desert: the South Pacific gyre [presented at the 2012 American Geophysical Union Fall Meeting, San Francisco, CA, 3–7 December 2012]. (Abstract PP13A-2062) http://abstractsearch.agu.org/meetings/2012/FM/PP13A-2062.html

Dunlea, A.G., Murray, R.W., Sauvage, J., Spivack, A.J., Harris, R.N., and D’Hondt, S.L., 2012. Geochemically tracking provenance changes in marine sediment from the South Pacific Gyre throughout the Cenozoic [presented at the 2012 American Geophysical Union Fall Meeting, San Francisco, CA, 3–7 December 2012]. (Abstract PP21C-06) http://abstractsearch.agu.org/meetings/2012/FM/PP21C-06.html

Huang, Y., Spivack, A.J., Røy, H., Gribsholt, B., Ziebis, W., Murray, R.W., Hyun, J., and D’Hondt, S., 2012. The Redfield ratio over the past 70 million years [presented at the 2012 American Geophysical Union Fall Meeting, San Francisco, CA, 3–7 December 2012]. (Abstract PP24F-03) http://abstractsearch.agu.org/​meetings/​2012/​FM/​PP23F-03.html

Kallmeyer, J., Pockalny, R.A., Adhikari, R.R., Smith, D.C., and D’Hondt, S.L., 2012. Global distribution of microbial abundance and biomass in subseafloor sediment [presented at the 2012 American Geophysical Union Fall Meeting, San Francisco, CA, 3–7 December 2012]. (Abstract B42C-01) http://abstractsearch.agu.org/meetings/2012/FM/B42C-01.html

Norris, R.D., and Hull, P.M., 2012. Geochemical consequences of mass extinction: the K/Pg compensation depth excursion [presented at the 2012 American Geophysical Union Fall Meeting, San Francisco, CA, 3–7 December 2012]. (Abstract PP22B-01) http://abstractsearch.agu.org/​meetings/​2012/​FM/​PP22B-01.html

Reese, B.K., Ariza, M., St. Peter, C., Hoffman, C., Edwards, K., and Mills, H.J., 2012. Re-defining the subsurface biosphere: characterization of fungal populations from energy limited deep marine subsurface sediments [presented at the 2012 American Geophysical Union Fall Meeting, San Francisco, CA, 3–7 December 2012]. (Abstract B43G-0490) http://abstractsearch.agu.org/​meetings/​2012/​FM/​B43G-0490.html

Rolewicz, Z., Thomas, D.J., and Marcantonio, F., 2012. Paleogene seawater osmium isotope records [presented at the 2012 American Geophysical Union Fall Meeting, San Francisco, CA, 3–7 December 2012]. (Abstract PP33B-2117) http://abstractsearch.agu.org/​meetings/​2012/​FM/​PP33B-2117.html

Sauvage, J., Spivack, A.J., Dunlea, A.G., Murray, R.W., Smith, D.C., and D’Hondt, S.L., 2012. Radiolyis and life in deep subseafloor sediment of the South Pacific Gyre [presented at the 2012 American Geophysical Union Fall Meeting, San Francisco, CA, 3–7 December 2012]. (Poster B43G-0488) http://abstractsearch.agu.org/​meetings/​2012/​FM/​B43G-0488.html

Shimono, T., and Yamazaki, T., 2012. Biogenic magnetite prevails in oxic pelagic red clay core in the South Pacific Gyre [presented at the 2012 American Geophysical Union Fall Meeting, San Francisco, CA, 3–7 December 2012]. (Poster GP41A-1106) http://abstractsearch.agu.org/​meetings/​2012/​FM/​GP41A-1106.html

Steele, J.A., Dekas, A.E., Harrison, B.K., Morono, Y., Inagaki, F., Ziebis, W., and Orphan, V.J., 2012. Mineral-association and activity of Bacteria and Archaea in the deep subsurface South Pacific Gyre sediment [presented at the 2012 American Geophysical Union Fall Meeting, San Francisco, CA, 3–7 December 2012]. (Poster B43G-0492) http://abstractsearch.agu.org/​meetings/​2012/​FM/​B43G-0492.html

Thomas, D.J., Korty, R., Huber, M., and Lyle, M.W., 2012. The late Paleogene evolution of Southern Ocean deep-water formation—the onset of global thermohaline circulation [presented at the 2012 American Geophysical Union Fall Meeting, San Francisco, CA, 3–7 December 2012]. (Abstract PP13C-01) http://abstractsearch.agu.org/​meetings/​2012/​FM/​PP13C-01.html

Tully, B., Horn, G., Edwards, K.J., Nelson, W., and Heidelberg, J., 2012. Metagenomic and phylogenetic analysis of deep-sea ferromanganese nodules from the South Pacific Gyre [presented at the 2012 American Geophysical Union Fall Meeting, San Francisco, CA, 3–7 December 2012]. (Abstract B51A-0485) http://abstractsearch.agu.org/​meetings/​2012/​FM/​B51A-0485.html

Uramoto, G., Moroni, Y., Uematsu, K., and Inagaki, F., 2012. An improved sample preparation method for non-destructive analyses of fine-grained subseafloor sediments using micro-focus X-ray CT and SEM [presented at the 2012 American Geophysical Union Fall Meeting, San Francisco, CA, 3–7 December 2012]. (Abstract EP13C-0872) http://abstractsearch.agu.org/​meetings/​2012/​FM/​EP13C-0872.html

Zhang, G., Smith-Duque, C.E., Tang, S., Li, S., and Alvarez Zarikian, C.A., 2012. A long-lived ancient subduction-induced mantle boundary within the Pacific mantle [presented at the 2012 American Geophysical Union Fall Meeting, San Francisco, CA, 3–7 December 2012]. (Abstract V43A-2812) http://abstractsearch.agu.org/​meetings/​2012/​FM/​V43A-2812.html

Ziebis, W., Patel, A., Krupke, A., and Ferdelman, T.G., 2012. Exploring metabolic activities of deeply buried microbial communities in oxic sediments underlying oligotrophic open ocean gyres [presented at the 2012 American Geophysical Union Fall Meeting, San Francisco, CA, 3–7 December 2012]. (Abstract B42C-02) http://abstractsearch.agu.org/​meetings/​2012/​FM/​B42C-02.html

AGU Fall Meeting 2013

Amaya, D.J., and Thomas, D.J., 2013. How dusty was the early Paleogene Greenhouse World? [presented at the American Geophysical Union Fall 2013 Meeting, San Francisco, CA, 9–13 December 2013]. (Abstract PP11B-1818) http://abstractsearch.agu.org/​meetings/​2013/​FM/​PP11B-1828.html

Dunlea, A.G., Murray, R.W., Sauvage, J., Spivack, A.J., Harris, R.N., and D’Hondt, S.L., 2013. Cenozoic sedimentation rates and provenance variations in the South Pacific Gyre [presented at the 2013 American Geophysical Union Fall Meeting, San Francisco, CA, 9–13 December 2013]. (Abstract PP11B-1816) http://abstractsearch.agu.org/​meetings/​2013/​FM/​PP11B-1816.html

Dzaugis, M.E., Spivack, A.J., Dunlea, A.G., Murray, R.W., Kelley, K.A., and D’Hondt, S.L., 2013. Radiolytic hydrogen production in basaltic basement of the South Pacific Gyre [presented at the American Geophysical Union Fall 2013 Meeting, San Francisco, CA, 9–13 December 2013]. (Abstract B13C-0486) http://abstractsearch.agu.org/​meetings/​2013/​FM/​B13C-0486.html

Morono, Y., Ito, M., Terada, T., and Inagaki, F., 2013. Metabolic activity of subseafloor microbes in the South Pacific Gyre [presented at the American Geophysical Union Fall 2013 Meeting, San Francisco, CA, 9–13 December 2013]. (Abstract B13C-0481) http://abstractsearch.agu.org/​meetings/​2013/​FM/​NH13A-1593.html

Rencurrel, M.C., and Thomas, D.J., 2013. Neodymium isotope provenance of Eolian dust in the South Pacific from 70 to 30 Ma [presented at the American Geophysical Union Fall 2013 Meeting, San Francisco, CA, 9–13 December 2013]. (Abstract PP11B-1815) http://abstractsearch.agu.org/​meetings/​2013/​FM/​PP11B-1815.html

AGU Fall Meeting 2014

D’Hondt, S., Inagaki, F., Alvarez Zarikian, C.A., Morono, Y., Pockalny, R.A., Sauvage, J., and Spivack, A.J., 2014. Microbial cells and aerobic respiration from seafloor to basement in the South Pacific Gyre [presented at the 2014 American Geophysical Union Fall Meeting, San Francisco, CA, 15–19 December 2014]. (Abstract B21L-08) http://abstractsearch.agu.org/​meetings/​2014/​FM/​B21L-08.html

Dunlea, A.G., Murray, R.W., Sauvage, J., Spivack, A.J., Harris, R.N., and D’Hondt, S.L., 2014. Paleoceanography in pelagic clay of the South Pacific Gyre [presented at the 2014 American Geophysical Union Fall Meeting, San Francisco, CA, 15–19 December 2014]. (Abstract PP21A-1297) http://abstractsearch.agu.org/​meetings/​2014/​FM/​PP21A-1297.html

AGU Fall Meeting 2015

Dunlea, A.G., and Higgins, J.A., 2015. Dust, volcanic ash, and the evolution of the South Pacific Gyre through the Cenozoic [presented at the 2015 American Geophysical Union Fall Meeting, San Francisco, California, 14–18 December 2015]. (Abstract PP43A-2258) http://abstractsearch.agu.org/​meetings/​2015/​FM/​PP43A-2258.html

Dzaugis, M.E., and Estes, E.R., 2015. Radiolytic hydrogen production in the South Pacific subseafloor basaltic aquifer [presented at the 2015 American Geophysical Union Fall Meeting, San Francisco, California, 14–18 December 2015]. (Abstract V33B-3100) http://abstractsearch.agu.org/​meetings/​2015/​FM/​V33B-3100.html

Kuratomi, T., and D’Hondt, S., 2015. Exploring frontiers of the deep biosphere through scientific ocean drilling [presented at the 2015 American Geophysical Union Fall Meeting, San Francisco, California, 14–18 December 2015]. (Abstract OS11C-01) http://abstractsearch.agu.org/​meetings/​2015/​FM/​OS11C-01.html

Mewes, K., and Orcutt, B., 2015. Exploring microbial life in oxic sediments underlying oligotrophic ocean gyres [presented at the 2015 American Geophysical Union Fall Meeting, San Francisco, California, 14–18 December 2015]. (Abstract PP41C-03) http://abstractsearch.agu.org/​meetings/​2015/​FM/​PP41C-03.html

Spivack, A.J., and Estes, E.R., 2015. Sedimentary catalysis of radiolytic H2 production, and implications for subseafloor life [presented at the 2015 American Geophysical Union Fall Meeting, San Francisco, California, 14–18 December 2015]. (Abstract PP43A-2249) http://abstractsearch.agu.org/​meetings/​2015/​FM/​PP43A-2249.html

AGU Fall Meeting 2016

Dunlea, A.G., Murray, R.W., Ramos, D.S., and Higgins, J.A., 2016. Deep sea authigenic clays as a sink for seawater Mg through the Cenozoic [presented at the 2016 American Geophysical Union Fall Meeting, San Francisco, California, 11–15 December 2016]. (Abstract PP11A-1993) http://abstractsearch.agu.org/​meetings/​2016/​FM/​PP11A-1993.html

McKinley, C.C., Scudder, R., and Thomas, D.J., 2016. Authigenic oxide neodymium isotopic composition as a proxy of seawater: applying multivariate statistical analyses [presented at the 2016 American Geophysical Union Fall Meeting, San Francisco, California, 11–15 December 2016]. (Abstract PP11A-2003) http://abstractsearch.agu.org/​meetings/​2016/​FM/​PP11A-2003.html

Pruss, S.B., Higgins, J.A., Bush, A.M., Leckie, R.M., Deeg, C., and Getzin, B.L., 2016. Deep-sea carbonate accumulation and surface ocean saturation state in the aftermath of the Cretaceous-Paleogene extinction [presented at the 2016 American Geophysical Union Fall Meeting, San Francisco, California, 11–15 December 2016]. (Abstract PP51C-2319) http://abstractsearch.agu.org/​meetings/​2016/​FM/​PP51C-2319.html

Santiago Ramos, D.P., Dunlea, A.G., and Higgins, J.A., 2016. Paired measurements of K and Mg isotopes and clay authigenesis in marine sediments [presented at the 2016 American Geophysical Union Fall Meeting, San Francisco, California, 11–15 December 2016]. (Abstract PP13D-06) http://abstractsearch.agu.org/​meetings/​2016/​FM/​PP13D-06.html

International Symposium on Ostracoda, 2013

Alvarez Zarikian, C.A., 2013. Paleocene, Oligocene and Miocene abyssal ostracods from the South Pacific gyre and their paleoceanographic significance [17th International Symposium on Ostracoda, Rome, Italy, 22–26 July 2013].

*The Expedition-related bibliography is continually updated online. Please send updates to PubCrd@iodp.tamu.edu.