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doi:10.2204/iodp.proc.314315316.132.2009

References

Archie, G.E., 1947. Electrical resistivity—an aid in core analysis interpretation. AAPG Bull., 31:350–366.

ASTM International, 1990. Standard method for laboratory determination of water (moisture) content of soil and rock (Standard D2216–90). In Annual Book of ASTM Standards for Soil and Rock (Vol. 04.08): Philadelphia (Am. Soc. Testing and Mater.).

Barron, J.A., 1985. Miocene to Holocene planktic diatoms. In Bolli, H.M., Saunders, J.B., and Perch-Nielsen, K. (Eds.), Plankton Stratigraphy: Cambridge (Cambridge Univ. Press), 763–809.

Biddle, J.F., Lipp, J.S., Lever, M.A., Lloyd, K.G., Sørensen, K.B., Anderson, R., Fredricks, H.F., Elvert, M., Kelly, T.J., Schrag, D.P., Sogin, M.L., Brenchley, J.E., Teske, A., House, C.H., and Hinrichs, K.-U., 2006. Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru. Proc. Natl. Acad. Sci. U. S. A., 103(10):3846–3851. doi:10.1073/​pnas.0600035103

Blow, W.H., 1969. Late middle Eocene to Recent planktonic foraminiferal biostratigraphy. In Brönnimann, P., and Renz, H.H. (Eds.), Proc. First Int. Conf. Planktonic Microfossils, Geneva, 1967: Leiden (E.J. Brill), 1:199–422.

Blum, P., 1997. Physical properties handbook: a guide to the shipboard measurement of physical properties of deep-sea cores. ODP Tech. Note, 26. doi:10.2973/​odp.tn.26.1997

Bullard, E.C., 1939. Heat flow in South Africa. Proc. R. Soc. London, Ser. A, 173:474–502.

Clark, S.P. (Ed.), 1966. Handbook of Physical Constants. Spec. Publ.—Mem. Geol. Soc. Am., 97.

D’Hondt, S., Inagaki, F., Ferdelman, T., Jørgensen, B.B., Kato, K., Kemp, P., Sobecky, P., Sogin, M., and Takai, K., 2007. Exploring subseafloor life with the Integrated Ocean Drilling Program. Sci. Drill., 5:26–37. doi:10.2204/​iodp.sd.5.03.2007

D’Hondt, S., Jørgensen, B.B., Miller, D.J., Batzke, A., Blake, R., Cragg, B.A., Cypionka, H., Dickens, G.R., Ferdelman, T., Hinrichs, K.-U., Holm, N.G., Mitterer, R., Spivack, A., Wang, G., Bekins, B., Engelen, B., Ford, K., Gettemy, G., Rutherford, S.D., Sass, H., Skilbeck, C.G., Aiello, I.W., Guerin, G., House, C.H., Inagaki, F., Meister, P., Naehr, T., Niitsuma, S., Parkes, R.J., Schippers, A., Smith, D.C., Teske, A., Wiegel, J., Naranjo Padillo, C., and Solis Acosta, J.L., 2004. Distributions of microbial activities in deep subseafloor sediments. Science, 306(5705):2216–2221. doi:10.1126/​science.1101155

D’Hondt, S., Rutherford, S., and Spivack., A.J., 2002. Metabolic activity of the subsurface life in deep-sea sediments. Science, 295(5562):2067–2070. doi:10.1126/​science.1064878

Duan, Z., Møller, N., Greenberg, J., and Weare, J.H., 1992. The prediction of methane solubility in natural waters to high ionic strength from 0° to 250°C and from 0 to 1600 bar. Geochim. Cosmochim. Acta, 56(4):1451–1460. doi:10.1016/​0016-7037(92)90215-5

Engelen, B., Ziegelmüller, K., Wolf, L., Köpke, B., Gittel, A., Cypionka, H., Treude, T., Nakagawa, S., Inagaki, F., Lever, M.A., and Steinsbu, B.O., 2008. Fluids from the ocean crust support microbial activities within the deep biosphere. Geomicrobiol. J., 25(1):56–66. doi:10.1080/​01490450701829006

Fisher, A.T., and Underwood, M.B., 1995. Calibration of an X-ray diffraction method to determine relative mineral abundances in bulk powders using matrix singular value decomposition: a test from the Barbados accretionary complex. In Shipley, T.H., Ogawa, Y., Blum, P., et al., Proc. ODP, Init. Repts., 156: College Station, TX (Ocean Drilling Program), 29–37. doi:10.2973/​odp.proc.ir.156.103.1995

Fukatsu, T., 1999. Acetone preservation: a practical technique for molecular analysis. Mol. Ecol., 8(11):1935–1945.

Fuller, M., 1969. Magnetic orientation of borehole cores. Geophysics, 34(5):772–774.

GE Healthcare, 2006. LightSpeed Series Learning and Reference Guide-Multi Slice CT: Waukesha, Wisconsin (GE Healthcare), 936.

Gieskes, J.M., Gamo, T., and Brumsack, H., 1991. Chemical methods for interstitial water analysis aboard JOIDES Resolution. ODP Tech. Note, 15. doi:10.2973/​odp.tn.15.1991

Gradstein, F.M., Ogg, J.G., and Smith, A. (Eds.), 2004. A Geologic Time Scale 2004: Cambridge (Cambridge Univ. Press). http://www.stratigraphy.org/

Hinrichs, K.-U., Hayes, J.M., Bach, W., Spivack, A.J., Hmelo, L.R., Holm, N.G., Johnson, C.G., and Sylva, S.P., 2006. Biological formation of ethane and propane in the deep marine subsurface. Proc. Natl. Acad. Sci. U.S.A. 103(40):14686–14689. doi:10.1073/​pnas.0606535103

Hinrichs, K.-U., Hayes, J.M., Sylva, S.P., Brewer, P.G., and DeLong, E.F., 1999. Methane-consuming archaebacteria in marine sediments. Nature (London, U. K.), 398(6730):802–805. doi:10.1038/​19751

Hulme, S.M., Wheat, C.G., Coggon, R.M., and McManus, J., 2008. Data report: trace element, Sr isotope, and Ge/Si composition of fluids and sediments in ridge-flank low-temperature hydrothermal environments. In Fisher, A.T., Urabe, T., Klaus, A., and the Expedition 301 Scientists, Proc. IODP, 301: College Station, TX (Integrated Ocean Drilling Program Management International, Inc.). doi:10.2204/​iodp.proc.301.202.2008

Inagaki, F., Kuypers, M.M.M., Tsunogai, U., Ishibashi, J.-I., Nakamura, K.-I., Treude, T., Ohkubo, S., Nakaseama, M., Gena, K., Chiba, H., Hirayama, H., Nunoura, T., Takai, K., Jørgensen, B.B., Horikoshi, K., and Boetius, A., 2006a. Microbial community in a sediment-hosted CO2 lake of the southern Okinawa Trough hydrothermal system. Proc. Natl. Acad. Sci. U.S.A., 103(38):14164–14169. doi:10.1073/​pnas.0606083103

Inagaki, F., Nunoura, T., Nakagawa, S., Teske, A., Lever, M., Lauer, A., Suzuki, M., Takai, K., Delwiche, M., Colwell, F.S., Nealson, K.H., Horikoshi, K., D’Hondt, S., and Jørgensen, B.B., 2006b. Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean margin. Proc. Natl. Acad. Sci. U. S. A., 103(8):2815–2820. doi:10.1073/​pnas.0511033103

Inagaki, F., Suzuki, M., Takai, K., Oida, H., Sakamoto, T., Aoki, K., Nealson, K.H., and Horikoshi, K., 2003. Microbial communities associated with geological horizons in coastal subseafloor sediments from the Sea of Okhotsk. Appl. Environ. Microbiol., 69(12):7224–7235. doi:10.1128/​AEM.69.12.7224-7235.2003

Kamikuri, S., Nishi, H., Motoyama, I., and Saito, S., 2004. Middle Miocene to Pleistocene radiolarian biostratigraphy in the northwest Pacific Ocean, ODP Leg 186. Isl. Arc, 13(1):191–226.

Keenan, J.H., Keyes, F.G., Hill, P.G., and Moore, J.G., 1978. Steam Tables: Thermodynamic Properties of Water Including Vapor, Liquid, and Solid Phases (International System of Units; S.I.): New York (John Wiley & Sons).

Kimura, G., Silver, E.A., Blum, P., et al., 1997. Proc. ODP, Init. Repts., 170: College Station, TX (Ocean Drilling Program). doi:10.2973/​odp.proc.ir.170.1997

Kirschvink, J.L., 1980. The least-squares line and plane and the analysis of palaeomagnetic data. Geophys. J. R. Astron. Soc., 62(3):699–718.

Kobayashi, T., Koide, O., Mori, K., Shimamura, S., Matsuura, T., Miura, T., Takaki, Y., Morono, Y., Nunoura, T., Imachi, H., Inagaki, F., Takai, K., and Horikoshi, K., 2008. Phylogenetic and enzymatic diversity of deep subseafloor aerobic microorganisms in organics- and methane-rich sediments off Shimokita Peninsula. Extremophiles, 12(4):519–527. doi:10.1007/​s00792-008-0157-7

Kodama, K.P., 1984. Palaeomagnetism of granitic intrusives from the Precambrian basement under eastern Kansas: orienting drill cores using secondary magnetization components. Geophys. J. R. Astron. Soc., 76:273–287.

Lipp, J.S., Morono, Y., Inagaki, F., and Hinrichs K.-U., 2008. Significant contribution of Archaea to extant biomass in marine subsurface sediments. Nature (London, U. K.), 454(7207):991–994. doi:10.1038/​nature07174

Louis, L., Robion, P., and David, C., 2004. A single method for the inversion of anisotropic data sets with application to structural studies. J. Struct. Geol., 26(11):2065–2072. doi:10.1016/​j.jsg.2004.03.005

Lourens, L.J., Hilgen, F.J., Shackleton, N.J., Laskar, J., and Wilson, D., 2004. The Neogene period. In Gradstein, F.M., Ogg, J.G., and Smith, A.G. (Eds.), A Geological Time Scale 2004. Cambridge (Cambridge Univ. Press), 409–440.

Lunau, M., Lemke, A., Walther, K., Martens-Habbena, W., and Simon, M., 2005. An improved method for counting bacteria from sediments and turbid environments by epifluorescence microscopy. Environ. Microbiol., 7(7):961–968. doi:10.1111/​j.1462-2920.2005.00767.x

Manheim, F.T., 1966. A hydraulic squeezer for obtaining interstitial waters from consolidated and unconsolidated sediments. Geol. Surv. Prof. Pap. (U.S.), 550-C:256–261.

Martini, E., 1971. Standard Tertiary and Quaternary calcareous nannoplankton zonation. In Farinacci, A. (Ed.), Proc. 2nd Int. Conf. Planktonic Microfossils Roma: Rome (Ed. Tecnosci.), 2:739–785.

Maruyama, T., and Shiono, M., 2003. Middle Miocene to Pleistocene diatom biostratigraphy of the northwest Pacific at Sites 1150 and 1151. In Suyehiro, K., Sacks, I.S., Acton, G.D., and Oda, M. (Eds.), Proc. ODP, Sci. Results, 186: College Station, TX (Ocean Drilling Program), 1–38. doi:10.2973/​odp.proc.sr.186.106.2003

Masui, N., Morono, Y., and Inagaki, F., 2008. Microbiological assessment of circulation mud fluids during the first operation of riser drilling by the deep-earth research vessel Chikyu. Geomicrobiol. J., 25(6):274–282. doi:10.1080/​01490450802258154

Mazzullo, J., and Graham, A.G. (Eds.), 1988. Handbook for shipboard sedimentologists. ODP Tech. Note, 8. doi:10.2973/​odp.tn.8.1988

Mazzullo, J.M., Meyer, A., and Kidd, R.B., 1988. Appendix I: new sediment classification scheme for the Ocean Drilling Program. In Mazzullo, J.M., and Graham, A.G. (Eds.), Handbook for shipboard sedimentologists. ODP Tech. Note, 8:45–67. doi:10.2973/​odp.tn.8.1988

McFadden, P.L., and Reid, A.B., 1982. Analysis of paleomagnetic inclination data. Geophys. J. R. Astron. Soc., 69:307–319.

Mees, F., Swennen, R., Van Geet, M. and Jacobs, P., 2003. Applications of X-ray computed tomography in the geosciences. Geol. Soc. Spec. Publ., 215(1):1–6. doi:10.1144/​GSL.SP.2003.215.01.01

Moore, G.F., Taira, A., Klaus, A., et al., 2001. Proc. ODP, Init. Repts., 190: College Station, TX (Ocean Drilling Program). doi:10.2973/​odp.proc.ir.190.2001

Nakano, T., Nakashima, Y., Nakamura, K., and Ikeda, S., 2000. Observation and analysis of internal structure of rock using X-ray CT. Chishitsugaku Zasshi, 106(5):363–378.

Nigrini, C., and Sanfilippo, A., 2001. Cenozoic radiolarian stratigraphy for low and middle latitudes with descriptions of biomarkers and stratigraphically useful species. ODP Tech. Note, 27. doi:10.2973/​odp.tn.27.2001

Okada, H., and Bukry, D., 1980. Supplementary modification and introduction of code numbers to the low-latitude coccolith biostratigraphic zonation (Bukry, 1973; 1975). Mar. Micropaleontol., 5:321–325. doi:10.1016/​0377-8398(80)90016-X

Parkes, R.J., Cragg, B.A., Bale, S.J., Getliff, J.M., Goodman, K., Rochelle, P.A., Fry, J.C., Weightman, A.J., and Harvey, S.M., 1994. Deep bacterial biosphere in Pacific Ocean sediments. Nature (London, U. K.), 371(6496):410–413. doi:10.1038/​371410a0

Parkes, R.J., Cragg, B.A., and Wellsbury, P., 2000. Recent studies on bacterial populations and processes in subseafloor sediments: a review. Hydrogeol. J., 8(1):11–28. doi:10.1007/​PL00010971

Parkes, R.J., Webster, G., Cragg, B.A., Weightman, A.J., Newberry, C.J., Ferdelman, T.G., Kallmeyer, J., Jørgensen, B.B., Aiello, I.W., and Fry, J.C., 2005. Deep sub-seafloor prokaryotes stimulated at interfaces over geological time. Nature (London, U. K.), 436(7049):390–394. doi:10.1038/​nature03796

Perch-Nielsen, K., 1985. Cenozoic calcareous nannofossils. In Bolli, H.M., Saunders, J.B., and Perch-Nielsen, K. (Eds.), Plankton Stratigraphy: Cambridge (Cambridge Univ. Press), 427–554.

Pimmel, A., and Claypool, G., 2001. Introduction to shipboard organic geochemistry on the JOIDES Resolution. ODP Tech. Note, 30. doi:10.2973/​odp.tn.30.2001

Raffi, I., Backman, J., Fornaciari, E., Pälike, H., Rio, D., Lourens, L., and Hilgen, F., 2006. A review of calcareous nannofossil astrobiochronology encompassing the past 25 million years. Quat. Sci. Rev., 25(23–24):3113–3137. doi:10.1016/​j.quascirev.2006.07.007

Ratcliffe, E.H., 1960. The thermal conductivities of ocean sediments. J. Geophys. Res., 65:1535–1541.

Richter, C., Acton, G., Endris, C., and Radsted, M., 2007. Handbook for shipboard paleomagnetists. ODP Tech. Note, 34. doi:10.2973/​odp.tn.34.2007

Rothwell, R.G., 1989. Minerals and Mineraloids in Marine Sediments: An Optical Identification Guide: London, UK (Elsevier).

Sakamoto, T., Kuroki, K., Sugawara, T., Aoike, K., Iijima, K., and Sugisaki, S., 2006. Non-destructive X-ray fluorescence (XRF) core-imaging scanner, TATSCAN-F2. Sci. Drill., 2:37–9.

Schippers, A., Neretin, L.N., Kallmeyer, J., Ferdelman, T.G., Cragg, B.A., Parkes R.J., and Jørgensen, B.B., 2005. Prokaryotic cells of the deep sub-seafloor biosphere identified as living bacteria. Nature (London, U. K.), 433(7028):861–864. doi:10.1038/​nature03302

Shepard, F.P., 1954. Nomenclature based on sand-silt-clay ratios. J. Sediment. Petrol., 24(3):151–158.

Shibuya, H., Merrill, D.L., Hsu, V., and Leg 124 Shipboard Scientific Party, 1991. Paleogene counterclockwise rotation of the Celebes Sea—orientation of ODP cores utilizing the secondary magnetization. In Silver, E.A., Rangin, C., von Breymann, M.T., et al., Proc. ODP, Sci. Results, 124: College Station, TX (Ocean Drilling Program), 519–523. doi:10.2973/​odp.proc.sr.124.169.1991

Shipboard Scientific Party, 2003. Explanatory notes. In D’Hondt, S.L., Jørgensen, B.B., Miller, D.J., et al., Proc. ODP, Init. Repts., 201: College Station, TX (Ocean Drilling Program), 1–103. doi:10.2973/​odp.proc.ir.201.105.2003

Shipley, T.H., Ogawa, Y., Blum, P., et al., 1995. Proc. ODP, Init. Repts., 156: College Station, TX (Ocean Drilling Program). doi:10.2973/​odp.proc.ir.156.1995

Smith, D.C., Spivack, A.J., Fisk, M.R., Haveman, S.A., and Staudigel, H., 2000a. Tracer-based estimates of drilling-induced microbial contamination of deep sea crust. Geomicrobiol. J., 17(3):207–219. doi:10.1080/​01490450050121170

Smith, D.C., Spivack, A.J., Fisk, M.R., Haveman, S.A., Staudigel, H., and the Leg 185 Shipboard Scientific Party, 2000b. Methods for quantifying potential microbial contamination during deep ocean coring. ODP Tech. Note, 28. doi:10.2973/​odp.tn.28.2000

Su, X., 1996. Development of late Tertiary and Quaternary coccolith assemblages in the northeast Atlantic. GEOMAR Rep., 48.

Taira, A., Hill, I., Firth, J.V., et al., 1991. Proc. ODP, Init. Repts., 131: College Station, TX (Ocean Drilling Program). doi:10.2973/​odp.proc.ir.131.1991

Tauxe, L., 1998. Paleomagnetic Principles and Practice: Dordrecht, Netherlands (Kluwer Academic Publishers).

Tauxe, L., Tucker, P., Peterson, N.P., and LaBrecque, J.L., 1984. Magnetostratigraphy of Leg 73 sediments. In Hsü, K.J., LaBrecque, J.L., et al., Init. Repts. DSDP, 73: Washington, DC (U.S. Govt. Printing Office), 609–621. doi:10.2973/​dsdp.proc.73.123.1984

Underwood, M.B., Basu, N., Steurer, J., and Udas, S., 2003. Data report: normalization factors for semiquantitative X-ray diffraction analysis, with application to DSDP Site 297, Shikoku Basin. In Mikada, H., Moore, G.F., Taira, A., Becker, K., Moore, J.C., and Klaus, A. (Eds.), Proc. ODP, Sci. Results, 190/196: College Station, TX (Ocean Drilling Program), 1–28. doi:10.2973/​odp.proc.sr.190196.203.2003

Vacquier, V., 1985. The measurement of thermal conductivity of solids with a transient linear heat source on the plane surface of a poorly conducting body. Earth Planet. Sci. Lett., 74(2–3):275–279. doi:10.1016/​0012-821X(85)90027-5

Von Herzen, R.P., and Maxwell, A.E., 1959. The measurement of thermal conductivity of deep-sea sediments by a needle-probe method. J. Geophys. Res., 64:1557–1563.

Wheat, C.G., Mottl, M.J., and Rudnicki, M., 2002. Trace element and REE composition of a low-temperature ridge-flank hydrothermal spring. Geochim. Cosmochim. Acta, 66(21):3693–3705. doi:10.1016/​S00167037(02)008943

Young, J.R., 1999. Neogene. In Bown, P.R. (Ed.), Calcareous Nannofossil Biostratigraphy: Dordrecht (Kluwer Academic Publ.), 225–265.

Zoth, G., and Haenel, R., 1988. Appendix: 1. In Haenel, R., Rybach, L., and Stegena, L. (Eds.), Handbook of Terrestrial Heat-Flow Density Determination: with Guidelines and Recommendations of the International Heat Flow Commission: Dordrecht (Kluwer Acad. Publ.), 449–4668.