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doi:10.2204/iodp.proc.301.105.2005

References

ASTM, 1990. Standard method for laboratory determination of water (moisture) content of soil and rock. In Annual Book of ASTM Standards for Soil and Rock (Vol. 04.08): Philadelphia (Am. Soc. Testing and Mater.), D2216-90 (revision of D2216-63, D2216-80).

Bach, W., Erzinger, J., Alt, J.C., and Teagle, D.A.H., 1996. Chemistry of the lower sheeted dike complex, Hole 504B (Leg 148): influence of magmatic differentiation and hydrothermal alteration. In Alt, J.C., Kinoshita, H., Stokking, L.B., and Michael, P.J. (Eds.), Proc. ODP, Sci. Results, 148: College Station, TX (Ocean Drilling Program), 39–55.

Bale, S.J., Goodman, K., Rochelle, P.A., Marchesi, J.R., Fry, J.C., Weightman, A.J., and Parkes, R.J., 1997. Desulfovibrio profundus sp. nov., a novel barophilic sulfate-reducing bacterium from deep sediment layers in the Japan Sea. Int. J. Syst. Bacteriol., 47:515–521.

Becker, K., and Fisher, A.T., 2000. Permeability of upper oceanic basement on the eastern flank of the Juan de Fuca Ridge determined with drill-string packer experiments. J. Geophys. Res., 105:897–912. doi:10.1029/1999JB900250

Berggren, W.A., Kent, D.V., Swisher, C.C., III, and Aubry, M.-P., 1995. A revised Cenozoic geochronology and chronostratigraphy. In Berggren, W.A., Kent, D.V., Aubry, M.-P., and Hardenbol, J. (Eds.), Geochronology, Time Scales and Global Stratigraphic Correlation. Spec. Publ.—SEPM (Soc. Sediment. Geol.), 54:129–212.

Blum, P., 1997. Physical properties handbook: a guide to the shipboard measurement of physical properties of deep-sea cores. ODP Tech. Note, 26 [Online]. Available from World Wide Web: <http://www-odp.tamu.edu/
publications/tnotes/tn26/INDEX.HTM>.

Bobrow, M.N., Harris, T.D., Shaughnessy, K J., and Litt, G.J., 1989. Catalyzed reporter deposition, a novel method of signal amplification application to immunoassays. J. Immunol. Methods, 125:279–285.
doi:10.1016/0022-1759(89)90104-X

Cande, S.C., and Kent, D.V., 1995. Revised calibration of the geomagnetic polarity timescale for the Late Cretaceous and Cenozoic. J. Geophys. Res., 100:6093–6095. doi:10.1029/94JB03098

Cowen, J.P., Giovannoni, S.J., Kenig, F., Johnson, H.P., Butterfield, D., Rappé, M.S., Hutnak, M., and Lam, P., 2003. Fluids from aging ocean crust that support microbial life. Science, 299:120–123. doi:10.1126/science.1075653

D’Hondt, S., Jørgensen, B.B., Miller, D.J., Blake, R., Cragg, B.A., Dickens, G.R., Ferdelman, T., Hinrichs, K.-U., Holm, N.G., Mitterer, R., Spivack, A., Bekins, B., Ford, K., Gettemy, G., Skilbeck, C.G., Aiello, I.W., Cypionka, H., Guerin, G., House, C., Inagaki, F., Meister, P., Naehr, T., Niitsuma, S., Parkes, R.J., Schippers, A., Smith, D.C., Teske, A., Wiegel, J., Padilla, C.N., Acosta, J.L.S., Wang, G., and Rutherford, S.D., 2004. Distribution of metabolic activities in deep subseafloor sediments. Science, 306(5705):2216-2221. doi:10.1126/science.1101155

D’Hondt, S., Rutherford, S., and Spivack., A.J., 2002. Metabolic activity of subsurface life in deep-sea sediments. Science, 295:2067–2070. doi:10.1126/science.1064878

Davis, E.E., Villinger, H., MacDonald, R.D., Meldrum, R.D., and Grigel, J., 1997. A robust rapid-response probe for measuring bottom-hole temperatures in deep-ocean boreholes. Mar. Geophys. Res., 19:267–281. doi:10.1023/A:1004292930361

Droser, M.L., and Bottjer, D.J., 1986. A semiquantitative field classification of ichnofabric. J. Sediment. Petrol., 56:558–559.

Duan, Z., Møller, N., Greenberg, J., and Weare, J.H., 1992. The prediction of methane solubility in natural waters to high ionic strengths from 0 to 250°C and from 0 to 1600 bar. Geochim. Cosmochim. Acta, 56:1451–1460. doi:10.1016/0016-7037(92)90215-5

Ellis, D.V., 1987. Well Logging for Earth Scientists: New York (Elsevier).

Evans, H.B., 1965. GRAPE—a device for continuous determination of material density and porosity. Trans. SPWLA 6th Ann. Logging Symp.: Dallas, 2:B1–B25.

Fisher, A.T., Davis, E.E., Hutnak, M., Spiess, V., Zühlsdorff, L., Cherkaoui, A., Christiansen, L., Edwards, K.M., MacDonald, R., Villinger, H., Mottl, M.J., Wheat, C.G., and Becker, K., 2003. Hydrothermal recharge and discharge across 50 km guided by seamounts on a young ridge flank. Nature (London, U. K.), 421:618–621. doi:10.1038/nature01352

Fisk, M.R., Giovannoni, S.J., and Thorseth, I.H., 1998. Alteration of oceanic volcanic glass: textural evidence of microbial activity. Science, 281:978–980. doi:10.1126/science.281.5379.978

Fry, J.C., 1988. Determination of biomass. In Austin, B. (Ed.), Methods in Aquatic Bacteriology: Chichester (Wiley), 27–72.

Gieskes, J.M., Gamo, T., and Brumsack, H., 1991. Chemical methods for interstitial water analysis aboard JOIDES Resolution. ODP Tech. Note, 15 [Online]. Available from World Wide Web: <http://www-odp.tamu.edu/
publications/tnotes/tn15/f_chem1.htm>.

Goldberg, D., 1997. The role of downhole measurements in marine geology and geophysics. Rev. Geophys., 35:315–342. doi:10.1029/97RG00221

Holtz, R.D., and Kovacs, W.D., 1981. An Introduction to Geotechnical Engineering: Englewood Cliffs, NJ (Prentice-Hall).

Hoppie, B.W., Blum, P., and the Shipboard Scientific Party, 1994. Natural gamma-ray measurements on ODP cores: introduction to procedures with examples from Leg 150. In Mountain, G.S., Miller, K.G., Blum, P., et al., Proc. ODP, Init. Repts., 150: College Station, TX (Ocean Drilling Program), 51–59.

Inagaki, F., Takai, K. Komatsu, T., Kanamatsu, T., Fujioka, K., and Horikoshi, K., 2001. Archaeology of Archaea: geomicrobiological record of Pleistocene thermal events concealed in a deep-sea subseafloor environment. Extremophiles, 5:385–392. doi:10.1007/s007920100211

Inagaki, F., Sakihama, Y., Inoue, A., Kato, C., and Horikoshi, K., 2002. Molecular phylogenetic analyses of reverse-transcribed bacterial rRNA obtained from deep-sea cold seep sediments. Environ. Microbiol., 4:277–286. doi:10.1046/j.1462-2920.2002.00294.x

Inagaki, F., Suzuki, M., Takai, K., Oida, H., Sakamoto, T., Aoki, K., Nealson, K.H., and Horikoshi, K., 2003. Microbial communities associated with geological horizons in coastal subseafloor sediments from the sea of Okhotsk. Appl. Environ. Microbiol., 69:7224–7235. doi:10.1128/AEM.69.12.7224-7235.2003

Inagaki, F., Okada, H., Tsapin, A.I., and Nealson, K.H., 2005. Microbial Survival: the paleome: a sedimentary genetic record of past microbial communities. Astrobiology, 5(2):141–153. doi:10.1089/ast.2005.5.141

Keene, J.B., 1975. Cherts and porcellanites from the North Pacific DSDP, Leg 32. In Larson, R.L., Moberly, R., et al. Init. Repts. DSDP, 32: Washington (U.S. Govt. Printing Office), 429–507.

Kormas, K.A., Smith, D.C., Edgcomb, V., and Teske, A., 2003. Molecular analysis of deep subsurface microbial communities in Nankai Trough sediments (ODP Leg 190, Site 1176). FEMS Microbiol. Ecol., 45:115–125. doi:10.1016/S0168-6496(03)00128-4

Kvenvolden, K.A., and McDonald, T.J., 1986. Organic geochemistry on the JOIDES Resolution—an assay. ODP Tech. Note, 6.

Lambe, T.W., and Whitman, R.V., 1979. Soil Mechanics (SI ver.): New York (Wiley).

Lamont-Doherty Earth Observatory–Borehole Research Group, 2001. Wireline Logging Services Guide [Online]. Available from World Wide Web: http://www.ldeo.columbia.edu/BRG/ODP/LOGGING/.

Mackenzie, K.V., 1981. Nine-term equation for sound speed in the oceans. J. Acoust. Soc. Am., 70:807–812.

Manheim, F.T., and Sayles, F.L., 1974. Composition and origin of interstitial waters of marine sediments, based on deep sea drill cores. In Goldberg, E.D. (Ed.), The Sea (Vol. 5): Marine Chemistry: The Sedimentary Cycle: New York (Wiley), 527–568.

Marchesi, J.R., Weightman, A.J., Cragg, B.A., Parkes, R.J., and Fry, J.C., 2001. Methanogen and bacterial diversity and distribution in deep gas hydrate sediments from the Cascadia margin as revealed by 16S rRNA molecular analysis. FEMS Microbiol. Ecol., 34:221–228.
doi:10.1016/S0168-6496(00)00099-4

Mazzullo, J.M., Meyer, A., and Kidd, R.B., 1988. New sediment classification scheme for the Ocean Drilling Program. In Mazzullo, J.M., and Graham, A.G. (Eds.), Handbook for shipboard sedimentologists. ODP Tech. Note, 8:45–67.

Mikucki, J.A., Liu, Y., Delwiche, M., Colwell, F.S., and Boone, D.R., 2003. Isolation of a methanogen from deep marine sediments that contain methane hydrates, and description of Methanoculleus submarinus sp. nov. Appl. Environ. Microbiol., 69:3311–3316.

Murray, R.W., Miller, D.J., and Kryc, K.A., 2000. Analysis of major and trace elements in rocks, sediments, and interstitial waters by inductively coupled plasma–atomic emission spectrometry (ICP-AES). ODP Tech. Note, 29 [Online]. Available from World Wide Web: <http://www-odp.tamu.edu/
publications/tnotes/tn29/INDEX.HTM>.

Muyzer, G., and Smalla, K., 1998. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient electrophoresis (TGGE) in microbial ecology. Antonie van Leeuwenhoek, 73:127–141. doi:10.1023/A:1000669317571

Newberry, C.J., Webster, G., Cragg, B.A., Parkes, R.J., Weightman, A.J., and Fry, J.C., 2004. Diversity of prokaryotes and methanogenesis in deep subsurface sediments from the Nankai Trough, Ocean Drilling Program Leg 190. Environ. Microbiol., 6:274–287.
doi:10.1111/j.1462-2920.2004.00568.x

Parkes, R.J., Cragg, B.A., Bale, S.J., Getliff, J.M., Goodman, K., Rochelle, P.A., Fry, J.C., Weightman, A.J., and Harvey, S.M., 1994. Deep bacterial biosphere in Pacific Ocean sediments. Nature (London, U. K.), 371:410–413. doi:10.1038/371410a0

Parkes, R.J., Cragg, B.A., and Wellsbury, P., 2000. Recent studies on bacterial populations and processes in marine sediments: a review. Hydrogeol. Rev., 8:11–28.

Passchier, C.W., and Trouw, R.A.J., 1996. Microtectonics: Berlin (Springer-Verlag).

Pernthaler, A., Pernthaler, J., and Amman, R., 2002. Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl. Environ. Microbiol. 68:3094–3101. doi:10.1128/AEM.68.6.3094-3101.2002

Ramsay, J.G., and Huber, M.I., 1987. The Techniques of Modern Structural Geology (Vol. 2): Folds and Fractures: New York (Acad. Press).

Reed, D.W., Fujita, Y., Delwiche, M.E., Blackwelder, D.B., Sheridan, P.P., Uchida, T., and Colwell, F.S. 2002. Microbial communities from methane hydrate-bearing deep marine sediments in a forearc basin. Appl. Environ. Microbiol., 68:3759–3770. doi:10.1128/AEM.68.8.3759-3770.2002

Rider, M.H., 1996. The Geological Interpretation of Well Logs (2nd ed.): Caithness (Whittles Publishing).

Rock-Color Chart Committee, 1991. Rock Color Charts. Geol. Soc. Am.

Schlumberger, 1989. Log Interpretation Principles/Applications: Houston (Schlumberger Educ. Services), SMP–7017.

Schlumberger, 1994. Log Interpretation Charts: Sugarland, TX (Schlumberger Wireline and Testing), SMP-7006.

Serra, O., 1984. Fundamentals of Well-Log Interpretation (Vol. 1): The Acquisition of Logging Data: Dev. Pet. Sci., 15A: Amsterdam (Elsevier).

Serra, O., 1986. Fundamentals of Well-Log Interpretation (Vol. 2): The Interpretation of Logging Data: Dev. Pet. Sci., 15B: Amsterdam (Elsevier).

Serra, O., 1989. Formation MicroScanner Image Interpretation: Houston (Schlumberger Educ. Services), SMP-7028.

Shipboard Scientific Party, 1989. Introduction and explanatory notes. In Robinson, P.T., Von Herzen, R., et al., Proc. ODP, Init. Repts., 118: College Station, TX (Ocean Drilling Program), 3–24.

Shipboard Scientific Party, 1991. Explanatory notes. In Taira, A., Hill, I., Firth, J.V., et al., Proc. ODP, Init. Repts., 131: College Station, TX (Ocean Drilling Program), 25–60.

Shipboard Scientific Party, 1992a. Explanatory notes. In Behrmann, J.H., Lewis, S.D., Musgrave, R.J., et al., Proc. ODP, Init. Repts., 141: College Station, TX (Ocean Drilling Program), 37–71.

Shipboard Scientific Party, 1992b. Explanatory notes. In Davis, E.E., Mottl, M.J., Fisher, A.T., et al., Proc. ODP, Init. Repts., 139: College Station, TX (Ocean Drilling Program), 55–97.

Shipboard Scientific Party, 1992c. Explanatory notes. In Dick, H.J.B., Erzinger, J., Stokking, L.B., et al., Proc. ODP, Init. Repts., 140: College Station, TX (Ocean Drilling Program), 5–33.

Shipboard Scientific Party, 1992d. Explanatory notes. In Parson, L., Hawkins, J., Allan, J., et al., Proc. ODP, Init. Repts., 135: College Station, TX (Ocean Drilling Program), 49–79.

Shipboard Scientific Party, 1993a. Explanatory notes. In Alt, J.C., Kinoshita, H., Stokking, L.B., et al., Proc. ODP, Init. Repts., 148: College Station, TX (Ocean Drilling Program), 5–24.

Shipboard Scientific Party, 1993b. Explanatory notes. In Gillis, K., Mével, C., Allan, J., et al., Proc. ODP, Init. Repts., 147: College Station, TX (Ocean Drilling Program), 15–42.

Shipboard Scientific Party, 1995. Explanatory notes. In Cannat, M., Karson, J.A., Miller, D.J., et al., Proc. ODP, Init. Repts., 153: College Station, TX (Ocean Drilling Program), 15–42.

Shipboard Scientific Party, 1999. Explanatory notes. In Dick, H.J.B., Natland, J.H., Miller, D.J., et al., Proc. ODP, Init. Repts., 176, 1–42 [CD-ROM]. Available from: Ocean Drilling Program, Texas A&M University, College Station, TX 77845-9547, U.S.A.

Shipboard Scientific Party, 2003a. Explanatory notes. In D’Hondt, S.L., Jørgensen, B.B., Miller, D.J., et al., Proc. ODP, Init. Repts., 201, 1–103 [CD-ROM]. Available from: Ocean Drilling Program, Texas A&M University, College Station TX 77845-9547, USA. [HTML]

Shipboard Scientific Party, 2003b. Explanatory notes. In Wilson, D.S., Teagle, D.A.H., Acton, G.D., Proc. ODP, Init. Repts., 206 [Online]. Available from World Wide Web: <http://wwwodp.tamu.edu/publications/
206_IR/chap_02/chap_02.htm>.

Smith, D.C., Spivack, A.J., Fisk, M.R., Haveman, S.A., Staudigel, H., and ODP Leg 185 Shipboard Scientific Party, 2000. Methods for quantifying potential microbial contamination during deep ocean coring. ODP Tech. Note, 28 [Online]. Available from World Wide Web: <http://www-odp.tamu.edu/
publications/tnotes/tn28/INDEX.HTM>.

Suzuki, M.T., Taylor, L.T., and DeLong, E.F., 2000. Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5′-nuclease assays. Appl. Environ. Microbiol., 66:4605–4614. doi:10.1128/AEM.66.11.4605-4614.2000

Takai, K., and Horikoshi, K., 2000. Rapid detection and quantification of members of the archaeal community by quantitative PCR using fluorogenic probes. Appl. Environ. Microbiol., 66:5066–5072.
doi:10.1128/AEM.66.11.5066-5072.2000

Twiss, R.J., and Moores, E.M., 1992. Structural Geology: New York (Freeman).

Vacquier, V., 1985. The measurement of thermal conductivity of solids with a transient linear heat source on the plane surface of a poorly conducting body. Earth Planet. Sci. Lett., 74:275–279.
doi:10.1016/0012-821X(85)90027-5

Von Herzen, R.P., and Maxwell, A.E., 1959. The measurement of thermal conductivity of deep-sea sediments by a needle-probe method. J. Geophys. Res., 64:1557–1563.

Wentworth, C.K., 1922. A scale of grade and class terms of clastic sediments. J. Geol., 30:377–392.

Wilson, M.S., Bakermans, C., and Madson, E.L., 1999. In situ, real-time catabolic gene expression: extraction and characterization of naphthalene dioxygenase mRNA transcripts from groundwater. Appl. Environ. Microbiol., 65:80–87.

Wilson, W.D., 1960. Speed of sound in seawater as a function of temperature, pressure and salinity. J. Acoust. Soc. Am., 32:641–644.

Wyllie, M.R.J., Gregory, A.R., and Gardner, L.W., 1956. Elastic wave velocities in heterogeneous and porous media. Geophysics, 21:41–70. doi:10.1190/1.1438217

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